YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HACD_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFLSVVRR VYLTLYNWIV FAGWAQVLYL AITTLKETGY ENVYDAIEKP LQLAQTAAVL  60
   61 EILHGLVGLV RSPVSATLPQ IGSRLFLTWG ILYSFPEVRS HFLVTSLVIS WSITEIIRYS 120
  121 FFGFKEALGF APSWHLWLRY SSFLLLYPTG ITSEVGLIYL ALPHIKTSEM YSVRMPNILN 180
  181 FSFDFFYATI LVLAIYVPGS PHMYRYMLGQ RKRALSKSKR E

Type	Start	End	Confidence
Cytoplasmic	1	11	0.87
Transmembrane Helix	12	33	0.87
Non-Cytoplasmic	34	100	0.67
Transmembrane Helix	101	122	0.83
Cytoplasmic	123	142	0.68
Transmembrane Helix	143	162	0.93
Non-Cytoplasmic	163	184	0.71
Transmembrane Helix	185	204	0.91
Cytoplasmic	205	221	0.73