YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSRFQSGF CPISSCPSLE NFIERIKDAC RFTLSAVLGT ILSAVLTFFF ALVGTLLGAL  60
   61 TGALIGQETE SGFIRGAAVG AISGAVFSIE VFESSLVLWK SNESRFGCLL YLIDVIVSLI 120
  121 SGRLVRERIG PAMLSAVQSQ MGAVDSTFEE LSSIFDTGGS KGLTGDLVDK IPKIKITGKN 180
  181 NLDASGNKDS CSVCLQDFQL GETVRSLPHC HHMFHLPCID NWLFRHGSCP MCRRDL

Type	Start	End	Confidence
Cytoplasmic	1	31	0.83
Transmembrane Helix	32	60	0.78
Non-Cytoplasmic	61	72	0.66
Transmembrane Helix	73	92	0.84
Cytoplasmic	93	105	0.56
Transmembrane Helix	106	125	0.63
Non-Cytoplasmic	126	236	0.52