YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VA725_ARATH
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL  60
   61 RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC LQKLPSSNNK FTYNCDGHTF 120
  121 NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK 180
  181 EHMQYCVDHP DEISKLAKVK AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD 240
  241 FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.43
Transmembrane Helix	8	26	0.66
Cytoplasmic	27	258	0.77
Transmembrane Helix	259	281	0.91
Non-Cytoplasmic	282	285	0.70