YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLCA_SHEEP
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELWPGAGTL LLLLFLLLLL LLPTLWFCSP SAKYFFKMAF YNGWILFLAV LAIPVCAVRG  60
   61 RNVENMKILR LMLLHIKYLY GIRVEVRGAH HFPPSQPYVV VSNHQSSLDL LGMMEVLPGH 120
  121 CVPIAKRELL WAGSAGLACW LAGVIFIDRK RTGDAISVMS EVAQTLLTQD VRVWVFPEGT 180
  181 RNHNGSMLPF KRGAFHLAVQ AQVPIVPIVM SSYQDFYCKK ERRFTSGRCQ VRVLPPVPTE 240
  241 GLKPDDVPAL ADRVRHSMLT VFREISTDGR GGGDYLKKPG GVGEAGL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.57
Transmembrane Helix	7	28	0.63
Non-Cytoplasmic	29	39	0.70
Transmembrane Helix	40	63	0.69
Cytoplasmic	64	128	0.66
Transmembrane Helix	129	147	0.58
Non-Cytoplasmic	148	287	0.57