YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALIS5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTAASSTV GGGGSSEISG VKKTSKRPKY SRFTQQELPA CKPILTPRWV ILTFLVAGVV  60
   61 FIPLGVICLF ASQGVVEIVD RYDTDCIPTS SRNNMVAYIQ GEGDKICKRT ITVTKAMKHP 120
  121 VYVYYQLENF YQNHRRYVKS RNDAQLRSPK EEHDVKTCAP EDNVGGEPIV PCGLVAWSLF 180
  181 NDTYSFSRNS QQLLVNKKGI SWKSDRENKF GKNVFPKNFQ KGAPIGGGTL NISKPLSEQE 240
  241 DLIVWMRTAA LPTFRKLYGK IETDLHAGDT ITVLLQNNYN TYSFNGQKKL VLSTTSWLGG 300
  301 RNDFLGIAYL TVGSICLFLA VTFAVLYLVK PRQLGDPSYL SWNRSAGGLQ

Type	Start	End	Confidence
Cytoplasmic	1	48	0.81
Transmembrane Helix	49	71	0.88
Non-Cytoplasmic	72	304	0.84
Transmembrane Helix	305	329	0.88
Cytoplasmic	330	350	0.81