YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21617914
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASMDHNHFL FPLLFIIIIS SLHVLRASTT PSHSHKLKSA TTIRKINRRG PYIGLVTVFE  60
   61 TEEDAFLGSV DFRLDPTHPF LDLSGRRFRI GKIHGKKVVY VRCGIGMVNA AAATQQMIDV 120
  121 FSVKGIVHFG IAGNINNSMS IGDVSIPKQI TNAGLWDWLN PGKAKGNEDV AYLDVGNYNV 180
  181 PQGNNKLGTI GYSYEELYSV SGHINSPKKV FWINTTQEWL HLAADLEKME LLQCVNASLC 240
  241 LPNKPKVVVG LKAATADIFV DNAAYRNFLY DTFGVSSSDM ESSAVAMTCA SNGYPIIVIR 300
  301 GLSDLAGVGD NTVRKFGSLA ATNTAKAVLE FIKKLPLS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.42
Transmembrane Helix	8	27	0.64
Non-Cytoplasmic	28	338	0.83