YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21593899
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVMSLMKDQ QNPIQQFQVK FKEIETGFKS WLSKQKLPVE AAVVTAMGGV QGAFIGGLMG  60
   61 TLSPEMPQAG IDPQAMASLK QTQALVGGPL VQARNFAAIT GVNAGIACVM KRIRGKEDLE 120
  121 SAVVAAFGSG VAYSLVSAGL QGQPMNAITT AAGFAVFQGV FFKLGERFSK PSVEDPYYTR 180
  181 GRSMLLKLGL EKYEKNFKKG LLADPTLPLL TDSALRDVSI PPGPRLLILD HIQRDPELKG 240
  241 KRGSRG

Type	Start	End	Confidence
Cytoplasmic	1	40	0.93
Transmembrane Helix	41	61	0.87
Non-Cytoplasmic	62	90	0.88
Transmembrane Helix	91	110	0.79
Cytoplasmic	111	120	0.75
Transmembrane Helix	121	140	0.85
Non-Cytoplasmic	141	146	0.70
Transmembrane Helix	147	164	0.85
Cytoplasmic	165	246	0.91