YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TI222_ARATH
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANDSSNAI DIDGNLDSDS NLNTDGDEAT DNDSSKALVT IPAPAVCLFR FAGDAAGGAV  60
   61 MGSIFGYGSG LFKKKGFKGS FADAGQSAKT FAVLSGVHSL VVCLLKQIRG KDDAINVGVA 120
  121 GCCTGLALSF PGAPQALLQS CLTFGAFSFI LEGLNKRQTA LAHSVSLRHQ TGLFQDHHRA 180
  181 LPLSLALPIP EEIKGAFSSF CKSLAKPRKF

Type	Start	End	Confidence
Cytoplasmic	1	45	0.71
Transmembrane Helix	46	68	0.68
Non-Cytoplasmic	69	86	0.68
Transmembrane Helix	87	105	0.55
Cytoplasmic	106	113	0.63
Transmembrane Helix	114	133	0.61
Non-Cytoplasmic	134	210	0.58