YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21593719
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPVGAEKK RVKRSSGSAS TSVRDSGSDS QPRKQAVKKD SFQLFAEKVR DHKGLESRWA  60
   61 VMEQARVEYF RGKDFVSFMK NNPDFKDILE EDKDLDTDDI ANVLLGKNLL VRCDRVTKTL 120
  121 RPRKKKLSTW PAHLEIFRDD QSFSENDAFF AWTFEKRHPL WQTLLSFFWP VLTLAICLFP 180
  181 VYPHRCKLIV LYSCAGILLM ILSLLFVRAV AFGAMWILLG KRVWFFPNIL AEEATLKELF 240
  241 RFWPKKDEEE PPKWTSRLFY TVVAIVVVML LRRHAPDEAA RARYQRRMSN IIDDVLEWSP 300
  301 KLALSGLMEN QQPVNITDAA NNSSDSAGGP DQTEEVDLDE TQGEDLDETQ GKEEAEGWTD 360
  361 SDLKT

Type	Start	End	Confidence
Non-Cytoplasmic	1	159	0.52
Transmembrane Helix	160	182	0.88
Cytoplasmic	183	188	0.45
Transmembrane Helix	189	218	0.79
Non-Cytoplasmic	219	256	0.52
Transmembrane Helix	257	275	0.58
Cytoplasmic	276	365	0.84