YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.98
Transmembrane Helix	34	55	0.94
Non-Cytoplasmic	56	67	0.85
Transmembrane Helix	68	90	0.87
Cytoplasmic	91	102	0.74
Transmembrane Helix	103	121	0.89
Non-Cytoplasmic	122	128	0.59
Transmembrane Helix	129	147	0.82
Cytoplasmic	148	155	0.64
Transmembrane Helix	156	176	0.92
Non-Cytoplasmic	177	188	0.82
Transmembrane Helix	189	212	0.89
Cytoplasmic	213	230	0.80
Transmembrane Helix	231	251	0.91
Non-Cytoplasmic	252	267	0.74
Transmembrane Helix	268	293	0.80
Cytoplasmic	294	297	0.55
Transmembrane Helix	298	319	0.86
Non-Cytoplasmic	320	325	0.66
Transmembrane Helix	326	347	0.87
Cytoplasmic	348	361	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEEAMLLL KEEDEGTRRT SVPTQLMKLK RTHWWILVFI SIFFLISAQA IAVLLGRFYY  60
   61 NEGGNSKWIS TLVQTCGFPI LYLPLCFLPA SHSSSSSCSF KTLVWIYLSL GFAIGLDNLL 120
  121 YSFGLLYLSA STYSILCSSQ LAFNGVFSYY INSQKITCLI LFSVLFLSVS AVLVSLDDDS 180
  181 NSPSGDSKWS YLIGCLCTVF ASLIYSLQLS LMQFSFENVL KSETFSMVLE MQIYTSLVAS 240
  241 CVAVIGLFAS GEWMLLSVEM EEFHEGQVIY VLTLVGTAVS WQLGSVGAVA LIFLVSSLFS 300
  301 NLIGTLSLIV TPLAAIAVFH DKLTEVKMVA MLIAFMGFGF YIYQNYLDDL KVQRAREAQA 360
  361 E