YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCO12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPCRRLVLS CKNQAASFLR RCGPSKRIQS VNYCKSTRQG HEIPDVKPLF PTGGGTQAPS  60
   61 RSRARYAVPA ILLGFAGFVG FLHYNDERRA VPRGQASSNS GCGCGSNTTV KGPIIGGPFT 120
  121 LVSTENKIVT ENDFCGKWVL LYFGYSFSPD VGPEQLKMMS KAVDKLESKH NEKILPVFVT 180
  181 LDPQRDTPSH LHAYLKEFDS RILGLTGTAS AMRQMAQEYR VYFKKVQEDG EDYLVDTSHN 240
  241 MYLINPKMEI VRCFGVEYNP DELSQELLKE VASVSQ

Type	Start	End	Confidence
Cytoplasmic	1	65	0.77
Transmembrane Helix	66	84	0.83
Non-Cytoplasmic	85	276	0.92