YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21593294
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAEHVSLVK FNRGFFVCLW VMLSLSCAAA SYGSSRQKFE VKKHLNRLNK PPVKTIQSPD  60
   61 GDIIDCIPIS KQPAFDHPFL KDHKIQMRPS YHPEGLFDDN KVSAEPKGKE THIPQLWHRY 120
  121 GKCTEGTIPM RRTREDDVLR ASSVKRYGKK KHRSVPIPKS AEPDLINQNG HQHAIAYVEG 180
  181 DKYYGAKATL NVWEPKIQNT NEFSLSQIWL LGGSFGQDLN SIEAGWQVSP DLYGDNNTRL 240
  241 FTYWTSDAYQ ATGCYNLLCS GFIQINSDIA MGASISPVSG YRNSQYDISI LIWKDPKEGH 300
  301 WWMQFGNGYV LGYWPSFLFS YLTESASMIE WGGEVVNSQS EGHHTWTQMG SGHFPEEGFS 360
  361 KASYFRNIQV VDGSNNLKAP KGLGTFTEKS NCYDVQTGSN DDWGHYFYYG GPGKNKNCP

Type	Start	End	Confidence
Signal Peptide	1	30	0.95
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	419	0.99