YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21593275
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGILVNNIL PQPPILRSLS SSSRRSSIRT LVMVKASSSE PSESVSVSTK TSDDTGAVVV  60
   61 FTAPPGFKPP EPKRFAVKSG KLFDVLGAAI GLFFRFGTGV FVSGYSASFV SKEEIPADQY 120
  121 ALRLGGITVK ETAKVGPRPE KPIEIYEFEG CPFCRKVREM VAVLDLDILY YPCPRXSPNF 180
  181 RPKVKQMGGK QQFPYMVDPN TGVSMYESDG IIKYLSEKYG DGKVPLSLSL GALTAITAGF 240
  241 AMIGRMGKGN LYTPAKLPPK PLEFWAYEGS PFCKLVREVL VELELPHIQR SCARGSPKRQ 300
  301 VLLEKAGHFQ VPYLEDPNTG VAMFESAEIV EYLKQTYAA

Type	Start	End	Confidence
Cytoplasmic	1	81	0.74
Transmembrane Helix	82	102	0.66
Non-Cytoplasmic	103	339	0.81