YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGAT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSREFRAE EHSNQFHSII AMAIWLGAIH FNVALVLCSL IFLPPSLSLM VLGLLSLFIF  60
   61 IPIDHRSKYG RKLARYICKH ACNYFPVSLY VEDYEAFQPN RAYVFGYEPH SVLPIGVVAL 120
  121 CDLTGFMPIP NIKVLASSAI FYTPFLRHIW TWLGLTAASR KNFTSLLDSG YSCVLVPGGV 180
  181 QETFHMQHDA ENVFLSRRRG FVRIAMEQGS PLVPVFCFGQ ARVYKWWKPD CDLYLKLSRA 240
  241 IRFTPICFWG VFGSPLPCRQ PMHVVVGKPI EVTKTLKPTD EEIAKFHGQY VEALRDLFER 300
  301 HKSRVGYDLE LKIL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	34	0.91
Non-Cytoplasmic	35	40	0.53
Transmembrane Helix	41	63	0.86
Cytoplasmic	64	314	0.70