YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21593162, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTYVSALFY GFGGIVVAGV ALLVAFQEKL VYVPVLPGLS KSYPITPARL NLIYEDIWLQ  60
   61 SSDGVRLHAW FIKMFPECRG PTILFFQENA GNIAHRLEMV RIMIQKLKCN VFMLSYRGYG 120
  121 ASEGYPSQQG IIKDAQAALD HLSGRTDIDT SRIVVFGRSL GGAVGAVLTK NNPDKVSALI 180
  181 LENTFTSILD MAGVLLPFLK WFIGGSGTKS LKLLNFVVRS PWKTIDAIAE IKQPVLFLSG 240
  241 LQDEMVPPFH MKMLYAKAAA RNPQCTFVEF PSGMHMDTWL SGGEVYWKTN LQFLEKYAPE 300
  301 KRKEDTGR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.57
Transmembrane Helix	7	26	0.87
Non-Cytoplasmic	27	308	0.68