YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21593130
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.67
Transmembrane Helix	28	47	0.67
Cytoplasmic	48	58	0.87
Transmembrane Helix	59	79	0.94
Non-Cytoplasmic	80	88	0.82
Transmembrane Helix	89	110	0.90
Cytoplasmic	111	119	0.92
Transmembrane Helix	120	140	0.90
Non-Cytoplasmic	141	168	0.90
Transmembrane Helix	169	189	0.88
Cytoplasmic	190	200	0.75
Transmembrane Helix	201	222	0.89
Non-Cytoplasmic	223	237	0.87
Transmembrane Helix	238	259	0.92
Cytoplasmic	260	265	0.80
Transmembrane Helix	266	285	0.92
Non-Cytoplasmic	286	290	0.71
Transmembrane Helix	291	310	0.93
Cytoplasmic	311	356	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVFQTGYAG NHVIMRYALN LGVSKLVFPL YRTIVAFSVL APSAYFLEKK ERPAMKISFL  60
   61 IQFFLLGLVG ITLNQGFYIF GLDNTSPTFA SATENVVPAV SFLMAALLGI EKVEWKRKDG 120
  121 IAKVVGTIVS VAGSLVITLY KGPTIYQPSL NIVNQTIKPE EAEEENKNWT LGCLCLMGHC 180
  181 LCWSSWIVLQ SPLLKKYPAR FSFVSYSCFF AVIQFFGISA YFERDLERWK IISGGELYAL 240
  241 LYTGLVGSAM VFAIQIYVVE RGGPLFVSAY LPLQTLIAAV LATLALGEHF YLGGLIGAIL 300
  301 IMSGLYLVVM GKSWENQALC QQQQHMISSA ASDFGDEEDY HNNKPRSPIS QPLISS