YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FLU_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALIRCCSS FSHTSGGQPP PRDKSRAPEI GKFATSIGYS VVRKPGDHPP FSKIIHSSSQ  60
   61 PKERQGKGIL QTPFASVGSL DKFSAFEGIG RLKLPVMAVL LTNSLQMATP LEALAAEICE 120
  121 PESSMFSMPI LLLVALIGAT VGGLLARQRK GELQRLNEQL RQINAALRRQ AKIESYAPSL 180
  181 SYAPVGARIP DSEIIVEPKK QELISKLKTG KTFLRNQEPE KAYTEFKIAL ELAQSLKDPT 240
  241 EEKKAARGLG ASLQRQGKYR EAIQYHSMVL AISKRESEDS GITEAYGAIA DCYTELGDLE 300
  301 KAGKFYDTYI ARLETD

Type	Start	End	Confidence
Cytoplasmic	1	93	0.79
Transmembrane Helix	94	110	0.57
Non-Cytoplasmic	111	124	0.63
Transmembrane Helix	125	146	0.90
Cytoplasmic	147	316	0.77