YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21593088
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGAAAIVAK SAAAPIERVK LLLQNQGEMI KTGHLIRPYT GLGNCFTRIY REEGVLSFWR  60
   61 GNQANVIRYF PTQASNFAFK GYFKNLLGCS KEKDGYLKWF AGNVASGSAA GATTSLFLYH 120
  121 LDYARTRLGT DAKECSVNGK RQFKGMIDVY RKTLSSDGIK GLYRGFGVSI VGITLYRGMY 180
  181 FGMYDTIKPI VLVGSLEGNF LASFLLGWSI TTSAGVIAYP FDTLRRRMML TSGQPVKYRN 240
  241 TIHALREILK SEGFYALYRG VTANMLLGVA GAGVLAGYDQ LHQIAYKHWV Q

Type	Start	End	Confidence
Cytoplasmic	1	160	0.91
Transmembrane Helix	161	180	0.92
Non-Cytoplasmic	181	199	0.90
Transmembrane Helix	200	221	0.93
Cytoplasmic	222	254	0.97
Transmembrane Helix	255	278	0.82
Non-Cytoplasmic	279	291	0.87