YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	F10AL_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSTKLSELK VFIDQCKSDP SLLTTPSLSF FRDYLESLGA KIPTGVHEED KDTKPRSFVV  60
   61 EESDDDMDET EEVKPKVEEE EEEDEIVESD VELEGDTVEP DNDPPQKMGD SSVEVTDENR 120
  121 EAAQEAKGKA MEALSEGNFD EAIEHLTRAI TLNPTSAIMY GNRASVYIKL KKPNAAIRDA 180
  181 NAALEINPDS AKGYKSRGMA RAMLGEWAEA AKDLHLASTI DYDEEISAVL KKVEPNAHKL 240
  241 EEHRRKYDRL RKEREDKKAE RDRLRRRAEA QAAYDKAKKE EQSSSSRPSG GGFPGGMPGG 300
  301 FPGGMPGGFP GGMGGMPGGF PGGMGGMGGM PGGFPGGMGG GMPAGMGGGM PGMGGGMPAG 360
  361 MGGGGMPGAG GGMPGGGGMP GGMDFSKILN DPELMTAFSD PEVMAALQDV MKNPANLAKH 420
  421 QANPKVAPVI AKMMGKFAGP Q

Type	Start	End	Confidence
Cytoplasmic	1	289	0.52
Transmembrane Helix	290	314	0.69
Non-Cytoplasmic	315	315	0.22
Transmembrane Helix	316	330	0.57
Cytoplasmic	331	331	0.03
Transmembrane Helix	332	346	0.64
Non-Cytoplasmic	347	354	0.52
Transmembrane Helix	355	378	0.70
Cytoplasmic	379	441	0.79