YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WTR16_ARATH
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	120	0.65
Transmembrane Helix	121	142	0.83
Non-Cytoplasmic	143	149	0.61
Transmembrane Helix	150	172	0.89
Cytoplasmic	173	180	0.66
Transmembrane Helix	181	203	0.91
Non-Cytoplasmic	204	210	0.63
Transmembrane Helix	211	233	0.73
Cytoplasmic	234	236	0.74
Transmembrane Helix	237	258	0.80
Non-Cytoplasmic	259	274	0.85
Transmembrane Helix	275	294	0.94
Cytoplasmic	295	302	0.87
Transmembrane Helix	303	323	0.91
Non-Cytoplasmic	324	339	0.90
Transmembrane Helix	340	359	0.96
Cytoplasmic	360	368	0.76
Transmembrane Helix	369	388	0.91
Non-Cytoplasmic	389	393	0.80
Transmembrane Helix	394	412	0.84
Cytoplasmic	413	417	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR  60
   61 INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC VNNGEDEENR SSGILSGGEG 120
  121 TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG 180
  181 INAWFSIALF ALVDATCFQG FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV 240
  241 RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP 300
  301 IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS 360
  361 ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA AVTLVAIYLV NFPEGND