YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FK173_ARATH
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLFTATVP SHHRFVSPSQ HPKQSLLSQS LSVTFTENPQ PTAVVTLQEQ QLTDWITSPV  60
   61 TRRFGIGAGF TWAGFLAFGV VSEQMKKSRL DVFQEEDNTR GLEKQEEIIL PNGIRYYDLQ 120
  121 VGSGATPSSG YLVVFDVKGQ VHGTEQVFVD TFGGKGKSLA MVMDSRPYSK GLCQGIEHVL 180
  181 RSMKAGGKRR VIIPPSLGFG DRNVEFGQGL EIPPSATLDY IIEVDTVYCF QTIV

Type	Start	End	Confidence
Cytoplasmic	1	59	0.52
Transmembrane Helix	60	81	0.61
Non-Cytoplasmic	82	234	0.82