YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21592973
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNCNLVSV LCVFLVLTLF HNPITVAGQN SPVVALFTFG DSNFDAGNKQ TLTKTLVAQG  60
   61 FWPYGKSRDD PNGKFSDGLI TPDFLAKFMK IPLAIAPALQ PNVNVSRGAS FAVEGATLLG 120
  121 APVESMTLNQ QVKKFNQMKA ANWNDDFVAK SVFMIYIGAN DYLNFTKNNP TADASAQQAF 180
  181 VTSVTNKLKS DISALYSSGA SKFVIQTLAP LGCLPIVRQE YNTGMDQCYE KLNDLAKQHN 240
  241 EKIGPMLNEM ARNSPASAPF QFTVFDFYNA VLTRTQRNQN FRFFVTNASC CGVGSHDAYG 300
  301 CGLPNVHSKL CEYQRSFLFF DGRHNSEKAQ EMFAHLLFGA DTNVVQPMNV RELTVYPVDE 360
  361 PMREFWVPPT PATVHASDSS SSTSRGYEYY

Type	Start	End	Confidence
Signal Peptide	1	28	0.98
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	390	0.99