YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRIM1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLCLSSSR IVSLHHQKPF LSLKLRSRPS DLSGLGRHTS PVCFNPLRLS GDRQRTATVS  60
   61 TRVEKRRKRG SSVVCYAAPI SANSLQWIST ISCLALMLAR GTGIHKSVVV PLFALHAPSS 120
  121 IVAWIKGEYG VWAAFLALIA RLFFTFPGEL ELPFIALLLV IVAPYQVMNI RGKQEGAIIA 180
  181 IAISGFLAFQ HFSRAGSLEK AYEKGSVLAT VAIIGVTVVS LLLLL

Type	Start	End	Confidence
Cytoplasmic	1	73	0.94
Transmembrane Helix	74	98	0.68
Non-Cytoplasmic	99	111	0.51
Transmembrane Helix	112	145	0.62
Cytoplasmic	146	149	0.36
Transmembrane Helix	150	168	0.79
Non-Cytoplasmic	169	175	0.62
Transmembrane Helix	176	193	0.94
Cytoplasmic	194	204	0.62
Transmembrane Helix	205	224	0.95
Non-Cytoplasmic	225	225	0.76