YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COPT5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHMTFYWGI KATILFDFWK TDSWLSYILT LIACFVFSAF YQYLENRRIQ FKSLSSSRRA  60
   61 PPPPRSSSGV SAPLIPKSGT RSAAKAASVL LFGVNAAIGY LLMLAAMSFN GGVFIAIVVG 120
  121 LTAGYAVFRS DDGGADTATD DPCPCA

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.82
Transmembrane Helix	23	44	0.92
Cytoplasmic	45	85	0.83
Transmembrane Helix	86	106	0.77
Non-Cytoplasmic	107	108	0.46
Transmembrane Helix	109	128	0.76
Cytoplasmic	129	146	0.65