YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HA22D_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKFWTFLTA LHSGAGPIVM LLYPLYASVI AMESTTKVDD EQWLAYWIIY SFLSLTELIL  60
   61 QSLIEWIPIW YTVKLVFVAW LVLPQFQGAA FIYNRVVREQ FKKHGVLRST HSKPTKPNIL 120
  121 HSIFPHREGH EAHSH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.69
Transmembrane Helix	8	30	0.86
Cytoplasmic	31	42	0.70
Transmembrane Helix	43	64	0.87
Non-Cytoplasmic	65	74	0.55
Transmembrane Helix	75	94	0.86
Cytoplasmic	95	135	0.80