YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21555480
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLILSSSS AQSSLLHVRP NLYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA  60
   61 VVPSDSTKTI TSTITANCVD SGVKAVEVEP TNDYGGGGGI GGDKFGGGGG GGDGNDDGGE 120
  121 DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS 180
  181 QLPTKPVLAS TVGVVMAGAL MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	139	0.66
Transmembrane Helix	140	160	0.78
Non-Cytoplasmic	161	186	0.51
Transmembrane Helix	187	206	0.93
Cytoplasmic	207	213	0.84
Transmembrane Helix	214	235	0.93
Non-Cytoplasmic	236	240	0.83