YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRYDPNPF AEEEEVNPFA NARGVPPASN SRLSPLPPEP VGFDYGRTVD IPLDRAGTQD  60
   61 LKKKEKELQA KEAELKRREQ DLKRKEDAAA RAGIVIEVKN WPPFFPLIHH DIANEIPVHL 120
  121 QRLQYVTFAT YLGLVLCLFW NIIAVTTAWI KGEGVTIWLL ALIYFIAGVP GGYVLWYRPL 180
  181 YRAFRTDSAL SFGWFFLFYM LHIAFCVFAA VAPPVVFKGK SLAGILPAID VLSGQAIVGI 240
  241 FYFIGFAFFC LESVVSIWVI QQVYMYFRGS GKQDQMRREA ARGALRAAV

Type	Start	End	Confidence
Cytoplasmic	1	126	0.96
Transmembrane Helix	127	150	0.87
Non-Cytoplasmic	151	155	0.83
Transmembrane Helix	156	177	0.94
Cytoplasmic	178	191	0.87
Transmembrane Helix	192	216	0.86
Non-Cytoplasmic	217	237	0.84
Transmembrane Helix	238	260	0.88
Cytoplasmic	261	289	0.93