YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17104693, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASGLTVTP PRFHFRWRSD RFGTSQRSSQ AFTVLSKLNN RNSAWPVLKS SRLALPTQRR  60
   61 NAMITRAMSA SFGDMADDSA AIFPRINVKD PYKRLGISRM ASEDEIQGAR NFLIQQYAGH 120
  121 KPSVDAIESA HDKIIMQKFH ERKNPKIDIS KKVRQVRQSK VVNFVFERFQ TPPNAVLVKT 180
  181 AVTFAVLGVL TVLFPTEEGP TLQVLLSLIA TFYFIHQRLQ KKLWTFLYGA GAFIFSWLVG 240
  241 TFLMVSVIPP FIKGPRGFEV MSSLLSYVLL WVASSYLR

Type	Start	End	Confidence
Cytoplasmic	1	174	0.92
Transmembrane Helix	175	194	0.88
Non-Cytoplasmic	195	199	0.77
Transmembrane Helix	200	216	0.87
Cytoplasmic	217	223	0.82
Transmembrane Helix	224	248	0.88
Non-Cytoplasmic	249	256	0.74
Transmembrane Helix	257	277	0.82
Cytoplasmic	278	278	0.89