YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20465443, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTSSCSSSS LLCHRPALSS SRSKFRVPCR TVFSPALTKI SPLTASSPSK SAKHKWKILC  60
   61 FRNEDSAPEN PEHFVPEELV KPDQDSPCTD KTDWKATFQK AADAVLKAIG TRWKVPWTVE 120
  121 TIVQVMLLWV AAFWFIGSWM IPFMAHISGF HKESLTFRGQ ALFSLITDVT EGLAGIAILH 180
  181 RCLSMFRPLA SDWFRFTLKG NWQLDVIIGC FMFPFVNRLS QLNLNLLPLP PTSSPVSLSS 240
  241 VEQSIMARDP VAMALYAVVV SICAPVWEEI VFRGFLLPSL TRYMPVWCAI LVSSIAFALA 300
  301 HFNVQRMLPL VFLGVVLGLI FARSRNLLPS MLLHSLWNGF VFMELMR

Type	Start	End	Confidence
Cytoplasmic	1	121	0.79
Transmembrane Helix	122	143	0.85
Non-Cytoplasmic	144	160	0.69
Transmembrane Helix	161	183	0.81
Cytoplasmic	184	200	0.78
Transmembrane Helix	201	220	0.80
Non-Cytoplasmic	221	251	0.79
Transmembrane Helix	252	271	0.85
Cytoplasmic	272	282	0.70
Transmembrane Helix	283	302	0.93
Non-Cytoplasmic	303	307	0.73
Transmembrane Helix	308	327	0.86
Cytoplasmic	328	347	0.80