YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21554522
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPMELMSI RNPNSTLLYR AHSRPPVKLC APPRSLLPSR RHFSAPRAVV SYPGIRFGFT  60
   61 SPEVLLNRSV VAFAASHEDS GESGVEVGKE KSDIDVEDDT SKEAWKQTLE SFKEQVSKMQ 120
  121 SVSSEAYSVN SQKAMTVLKE TSEQLRIQAE KAKEELGTKA KVVSEEGREY ILKAAEESPS 180
  181 DVKEIVEAFA STEDLKNVSR ANDFHVGIPY GLLLLVGGFI NFMVSGSIPA IRFGVILGGA 240
  241 LFALSLASLK SHRKGESSTK FLKGQMAIVA IIFLRELRLL LSQKSTFLGF FTTLTSGGVL 300
  301 GFYLYKMVVK REKGPTLEDG GEDESSDGFV RSEG

Type	Start	End	Confidence
Cytoplasmic	1	203	0.96
Transmembrane Helix	204	224	0.88
Non-Cytoplasmic	225	229	0.76
Transmembrane Helix	230	249	0.94
Cytoplasmic	250	260	0.85
Transmembrane Helix	261	279	0.88
Non-Cytoplasmic	280	285	0.79
Transmembrane Helix	286	305	0.93
Cytoplasmic	306	334	0.90