YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHCA6_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP  60
   61 LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL KWFAQAELIH SRWAMLAVTG 120
  121 IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI 180
  181 EPKYPHKVNP KPDVGYPGGL WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA 240
  241 TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Type	Start	End	Confidence
Signal Peptide	1	18	0.90
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	270	0.94