YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21280943, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR  60
   61 YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV GGRLSYKPPI YDINAPDLYI 120
  121 PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL 180
  181 DIVAYGGYAF AGLCLAGFAK IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS 240
  241 KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Type	Start	End	Confidence
Cytoplasmic	1	117	0.88
Transmembrane Helix	118	138	0.91
Non-Cytoplasmic	139	148	0.77
Transmembrane Helix	149	170	0.88
Cytoplasmic	171	178	0.80
Transmembrane Helix	179	199	0.89
Non-Cytoplasmic	200	206	0.64
Transmembrane Helix	207	226	0.88
Cytoplasmic	227	243	0.87
Transmembrane Helix	244	263	0.95
Non-Cytoplasmic	264	269	0.83