YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAX1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP  60
   61 VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI HDFCFGIPYG GLVVSGGLLG 120
  121 FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS 180
  181 MTKKLFPAGV FAVISACMLC FYSYVVLSGG NPPPKKLKPS ATSPSY

Type	Start	End	Confidence
Cytoplasmic	1	102	0.98
Transmembrane Helix	103	123	0.92
Non-Cytoplasmic	124	129	0.77
Transmembrane Helix	130	151	0.86
Cytoplasmic	152	157	0.86
Transmembrane Helix	158	177	0.88
Non-Cytoplasmic	178	184	0.78
Transmembrane Helix	185	207	0.91
Cytoplasmic	208	226	0.86