YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21553420
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQELQRIN EKKPWQVLEF YSGIGGMRYS LMASGIVSEV VEAFEINDSA NDVYQHNFKH  60
   61 RPYQGNIQSL TAADLDKYNA DAWLLSPPCQ PYTRQGLQKH SGDARASSFL RILELIPHTT 120
  121 KPPQMLFVEN VVGFETSDTH MEMIGTLTKL DYVTQEFILS PLQFGVPYSR PRYFCLAKRK 180
  181 PLPFKSQHSN NKLLWSPDPL YGRDDQVEFG KCQAEEGLDK LLEFCEPVEK FLELAAHVDG 240
  241 EPSSVDDSEN GSKDCCGQEG DSVPDSVHQY LVPVSLIERW GNAMDIVYPD SKRCCCFTKS 300
  301 YYRYVKGTGS LLATVQPKIK GKESCLKEQR LRYFTPREVA NFHSFPEDFE FPKHISLRQR 360
  361 YAMLGNSLSV AVVAPLLRYL FDS

Type	Start	End	Confidence
Non-Cytoplasmic	1	360	0.79
Transmembrane Helix	361	381	0.55
Cytoplasmic	382	383	0.34