YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSTR5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATANGAKSP SSMGPKVLFY SILLTLQYGA QPLISKRCIR KDVIVTSSVL TCEIVKVICA  60
   61 LILMARNGSL KGLAKEWTLM GSLTASGLPA AIYALQNSLL QISYRSLDSL TFSILNQTKI 120
  121 FFTAFFTFII LRQKQSILQI GALCLLIMAA VLLSVGEGSN KDSSGINADQ KLFYGIIPVL 180
  181 AASVLSGLAS SLCQWASQVK KHSSYLMTVE MSIVGSLCLL VSTLKSPDGE AIKKYGFFHG 240
  241 WTALTLVPVI SNALGGILVG LVTSHAGGVR KGFVIVSALL VTALLQFAFE GKPPSSYCLV 300
  301 ALPLVMSSIS MYQKYPYIDK KKKKV

Type	Start	End	Confidence
Cytoplasmic	1	76	0.62
Transmembrane Helix	77	95	0.88
Non-Cytoplasmic	96	109	0.71
Transmembrane Helix	110	130	0.78
Cytoplasmic	131	136	0.83
Transmembrane Helix	137	156	0.94
Non-Cytoplasmic	157	171	0.90
Transmembrane Helix	172	195	0.89
Cytoplasmic	196	203	0.86
Transmembrane Helix	204	224	0.92
Non-Cytoplasmic	225	239	0.86
Transmembrane Helix	240	262	0.91
Cytoplasmic	263	271	0.70
Transmembrane Helix	272	289	0.95
Non-Cytoplasmic	290	295	0.82
Transmembrane Helix	296	315	0.85
Cytoplasmic	316	325	0.84