YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCO11_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASALCRTAS RLRSVQLFRR IRVSSDLLSA SSPSPACISD ALRHGDFSLP RSFFSLNCGI  60
   61 EMLKMDQRCL LSTSASDTTS KHDSGKPETK SSEKNEKSGG SESSDGGSDH KNERASGKDV 120
  121 RGGPVSWMSF FLLFATGAGL VYYYDTQKKR HIEDINKNSI AVKEGPSAGK AAIGGPFSLI 180
  181 RDDGKRVTEK NLMGKWTILY FGFTHCPDIC PDELIKLAAA IDKIKENSGV DVVPVFISVD 240
  241 PERDTVQQVH EYVKEFHPKL IGLTGSPEEI KSVARSYRVY YMKTEEEDSD YLVDHSIVMY 300
  301 LMSPEMNFVK FYGKNHDVDS LTDGVVKEIR QYRK

Type	Start	End	Confidence
Signal Peptide	1	39	0.67
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	334	0.86