YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21592518
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLASVIHHG ILPPAKSDRI FLTIPVFPPD FRARGWTKSP FSLLINPSLA SAANRRLSHL  60
   61 PPIACSRGID QEDEEKESRE LLPHKNDENA TTSRSSSSVD SGGLKDYQQE ETYKTSFKTV 120
  121 ALCVGTAVAF GIGIGLKEGV GKASEFFAGY ILEQSLSVDN LFVFVLVFKY FKVPLMYQNK 180
  181 VLTYGIAGAI VFRFTLILLG TATLQKFEAV NLLLAAVLLY SSFKLFASEE DDTDLSDNFI 240
  241 VKTCQRFIPV TSSYDGNRFF TKHDGILKAT PLLLTVAVIE LSDIAFAVDS IPAVFGVTRD 300
  301 PFIGLTSNLF AILGLRSLYT LISEGMDELE YLQPSIAVVL GFIGVKMILD FFGFHISTEA 360
  361 SLGVVALSLS TGVLLSLTNK SSDS

Type	Start	End	Confidence
Cytoplasmic	1	116	0.91
Transmembrane Helix	117	136	0.81
Non-Cytoplasmic	137	149	0.69
Transmembrane Helix	150	171	0.64
Cytoplasmic	172	180	0.65
Transmembrane Helix	181	202	0.87
Non-Cytoplasmic	203	208	0.52
Transmembrane Helix	209	227	0.49
Cytoplasmic	228	268	0.66
Transmembrane Helix	269	287	0.61
Non-Cytoplasmic	288	301	0.65
Transmembrane Helix	302	320	0.87
Cytoplasmic	321	330	0.73
Transmembrane Helix	331	349	0.87
Non-Cytoplasmic	350	359	0.52
Transmembrane Helix	360	378	0.88
Cytoplasmic	379	384	0.76