YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18418224, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKMNVRFMI VLMVMSLVLG FSSAVDFRWR KTAGFSDRFT RAVSSVVFPV HGNVYPLGYY  60
   61 NVTINIGQPP RPYYLDLDTG SDLTWLQCDA PCVRCLEAPH PLYQPSSDLI PCNDPLCKAL 120
  121 HLNSNQRCET PEQCDYEVEY ADGGSSLGVL VRDVFSMNYT QGLRLTPRLA LGCGYDQIPG 180
  181 ASSHHPLDGV LGLGRGKVSI LSQLHSQGYV KNVIGHCLSS LGGGILFFGD DLYDSSRVSW 240
  241 TPMSREYSKH YSPAMGGELL FGGRTTGLKN LLTVFDSGSS YTYFNSKAYQ AVTYLLKREL 300
  301 SGKPLKEARD DHTLPLCWQG RRPFMSIEEV KKYFKPLALS FKTGWRSKTL FEIPPEAYLI 360
  361 ISMKGNVCLG ILNGTEIGLQ NLNLIGDISM QDQMIIYDNE KQSIGWMPVD CDELASLKAA 420
  421 QVYEY

Type	Start	End	Confidence
Signal Peptide	1	24	0.90
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	425	0.98