YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P4H9_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRLKSYRR KKLGLATVIV FCSLCFLFGF YGSTLLSQNV PRVKPRLRML DMVENGEEEA  60
   61 SSMPHGVTGE ESIGSIPFQV LSWRPRAIYF PNFATAEQCQ AIIERAKVNL KPSALALRKG 120
  121 ETAENTKGTR TSSGTFISAS EESTGALDFV ERKIARATMI PRSHGESFNI LRYELGQKYD 180
  181 SHYDVFNPTE YGPQSSQRIA SFLLYLSDVE EGGETMFPFE NGSNMGIGYD YKQCIGLKVK 240
  241 PRKGDGLLFY SVFPNGTIDQ TSLHGSCPVT KGEKWVATKW IRDQDQEE

Type	Start	End	Confidence
Signal Peptide	1	37	0.55
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	288	0.99