YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110738630, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKATTKTPIH VVWSWVRRQP PKVKAFLAVV TGMAALVLLR FIVHDHDNLF VAAEAVHSIG  60
   61 ICVLIYKLMK EKTCAGLSLK SQELTAIFLA VRLYCSIVME YDIHTILDLA TLGTTLWVIF 120
  121 MIRFKLRASY MEDKDNFPLY YVLAPCVALA VFIHPSTSHN IINRISWALC VYLEAVSVLP 180
  181 QLRVMQNTKI VEPFTAHYVF ALGVARFLSC AHWVLQVVDT RGRLLVALGY GLWPSMVLIS 240
  241 EIVQTFILAD FCYYYVKSVF GGQLVLRLPS GVV

Type	Start	End	Confidence
Cytoplasmic	1	22	0.96
Transmembrane Helix	23	43	0.94
Non-Cytoplasmic	44	49	0.86
Transmembrane Helix	50	69	0.79
Cytoplasmic	70	78	0.71
Transmembrane Helix	79	98	0.69
Non-Cytoplasmic	99	103	0.72
Transmembrane Helix	104	124	0.87
Cytoplasmic	125	136	0.86
Transmembrane Helix	137	157	0.91
Non-Cytoplasmic	158	164	0.79
Transmembrane Helix	165	184	0.54
Cytoplasmic	185	193	0.52
Transmembrane Helix	194	215	0.89
Non-Cytoplasmic	216	225	0.50
Transmembrane Helix	226	254	0.64
Cytoplasmic	255	273	0.52