YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RIDA_ARATH
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWSVFRSIN TPTLDLSTAL RSTRTPLVAA GVGCATFAGV SLFRMSSRSP PFASLSVSAS  60
   61 SVKKEVVSTE KAPAALGPYS QAIKANNLVF LSGVLGLIPE TGKFVSESVE DQTEQVLKNM 120
  121 GEILKASGAD YSSVVKTTIM LADLADFKTV NEIYAKYFPA PSPARSTYQV AALPLNAKIE 180
  181 IECIATL

Type	Start	End	Confidence
Cytoplasmic	1	24	0.65
Transmembrane Helix	25	43	0.77
Non-Cytoplasmic	44	187	0.87