YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21554153
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFATKTVLFI AVVSLLGTFS SAAVDTFIYG GCSQAKYFQG SPYESNVNSL LTSFVSSASL  60
   61 YTYNNFTANG ISGDSSSSVY GLYQCRGDLS SGSGDCARCV ARAVSRLGSL CAMASGGALQ 120
  121 LEGCFVKYDN TTFLGVEDKT VVVRRCGPPV GYNSDEMTRR DSVVGSLAAS SGGSYRVGVS 180
  181 GELQGVAQCT GDLSATECQD CLMEAIGRLR TDCGGAAWGD VYLAKCYARY SARGGHSRAN 240
  241 GYGGNRNNND DDEIEKTLAI IVGLIAGVTL LVVFLSFMAK SCERGKGGK

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	257	0.99
Transmembrane Helix	258	279	0.91
Cytoplasmic	280	289	0.93