YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21554137
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGTCTSIRP RLIGSSSIVE LSRLINRAGV PFSVRFSTRT RALHGGGLTA PTSREEGPSC  60
   61 IFVGPIDSAR KETLEALYRQ AKDAYYNGKP LIVDDMFDRV ELKLRWYGSK SVVKYPRCSL 120
  121 LRQSTYADAE DDASQVLLLA TVWIMIFLFG SSACVLPTIY GVGLVYGGDP FDSGLVYSNQ 180
  181 LSSSVPILSK FNGILLSVLG PAFGYPIASS AVRALKGLWR NDLTALKGDC PNCGEEVFAF 240
  241 VRSDQSNRSA HKADCHVCEC TLEFRTKVEK SASRLGRKWV YGRIYLVSRP RRDRRSKFT

Type	Start	End	Confidence
Cytoplasmic	1	141	0.98
Transmembrane Helix	142	164	0.89
Non-Cytoplasmic	165	190	0.86
Transmembrane Helix	191	209	0.89
Cytoplasmic	210	299	0.96