YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE  60
   61 GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG KPLPLYQKAL CGLTAGAIGA 120
  121 CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL 180
  181 NMGMLASYDQ SAEYMRDNLG FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ 240
  241 GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Type	Start	End	Confidence
Cytoplasmic	1	109	0.58
Transmembrane Helix	110	129	0.33
Non-Cytoplasmic	130	298	0.50