YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21553837
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITIKW DVMSWTPDGY  60
   61 VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT TEQGDCSKYK GNIPHCCKKD 120
  121 PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT 180
  181 LMGPGPGYTC GPAKIVRPTK FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF 240
  241 YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI 300
  301 RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG 360
  361 LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT FEKGWAFPRR IYFNGDNCVM 420
  421 PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA

Type	Start	End	Confidence
Signal Peptide	1	36	0.95
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	436	0.99
Transmembrane Helix	437	455	0.86
Cytoplasmic	456	456	0.91