YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25360983, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELKERLLP PRPASAINLR GDAGSRPSPS GRQPLLGVDV LGLKKRGQGL KSWIRVDTSA  60
   61 NSQVIEVDKF TMMRRCDLPA RDLRLLDPLF VYPSTILGRE KAIVVNLEQI RCIITADEVL 120
  121 LLNSLDNYVL RYVVELQQRL KASSVTEVWN QDSLELSRRR SRSLDNVFQN SSPDYLPFEF 180
  181 RALEVALEAA CTFLDSQASE LEIEAYPLLD ELTSKISTLN LERARRLKSR LVALTRRVQK 240
  241 VRDEIEQLMD DDGDMAEMYL TEKKKRMEGS LYGDQSLPVY RTNDCFSLSA PVSPVSSPPE 300
  301 SRRLEKSLSI VRSRHDSARS SEDATENIEE LEMLLEAYFV VIDSTLNKLT SLKEYIDDTE 360
  361 DFINIQLDNV RNQLIQFELL LTTATFVVAI FGVVAGIFGM NFEIDFFEKP GAFKWVLAIT 420
  421 GVCGLVVFLA FLWFYKRRRL MPL

Type	Start	End	Confidence
Cytoplasmic	1	378	0.79
Transmembrane Helix	379	400	0.92
Non-Cytoplasmic	401	411	0.72
Transmembrane Helix	412	435	0.90
Cytoplasmic	436	443	0.78