YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21553757
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.75
Transmembrane Helix	29	47	0.81
Cytoplasmic	48	57	0.76
Transmembrane Helix	58	73	0.90
Non-Cytoplasmic	74	86	0.74
Transmembrane Helix	87	110	0.89
Cytoplasmic	111	123	0.83
Transmembrane Helix	124	145	0.87
Non-Cytoplasmic	146	165	0.94
Transmembrane Helix	166	189	0.88
Cytoplasmic	190	198	0.83
Transmembrane Helix	199	219	0.93
Non-Cytoplasmic	220	235	0.89
Transmembrane Helix	236	254	0.96
Cytoplasmic	255	262	0.80
Transmembrane Helix	263	284	0.94
Non-Cytoplasmic	285	288	0.85
Transmembrane Helix	289	308	0.93
Cytoplasmic	309	362	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLQVGLAG MDILSKAVLN KGMSNYVLVV YRHAVATIVM APFAFYFDKK VRPKMTLMIF  60
   61 FKISLLGLLE PVIDQNLYYL GMKYTTATFA TAMYNVLPAI TFVLAYIFGL ERVKLRCIRS 120
  121 TGKVVGTLAT VGGAMIMTLV KGPVLDLFWT KGVSAHNTAG TDIHSAIKGA VLVTIGCFSY 180
  181 ACFMILQAIT LRTYPAELSL TAWICLMGTI EGTAVALVME KGNPSAWAIG WDTKLLTATY 240
  241 SGIVCSALAY YVGGVVMKTR GPVFVTAFSP LCMIIVAIMS TIIFAEQMYL GRVLGAVVIC 300
  301 AGLYLVIWGK GKDYKYNSTL QLDDKSAQPK LELSGNGKDN VDHEVITISK QGEQRRTAVE 360
  361 TV