YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_ARATH
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLRKVVNE IAYTRVHTNS PALHRSLVPF LTIASSLYGV ALQIRRSLYR YSLLQKHRLP  60
   61 VPVISVGNLS WGGNGKTPMV EYISQFLVDS GLTPLILTRG YAGGDEVKML ERHLRGGPVK 120
  121 IGVGANRAAT AALFLDKYGC VDSSSLRSFF DLHERAQVWT ISEKIGCIIL DDGMQHWSLS 180
  181 RDLEIVMLNG LNPWGNGHLM PHGPLREPLL ALERADVAVV HHVDLITKQS LRDIENMIQG 240
  241 FKKSIPIFYS KMVPKYLFDV KNARSHVALE ALRCASVLCV SAIGSADAFV KSIEMTGAHY 300
  301 VDRLDFSDHH LFEAEDVETM SRRAKGLEHK SNCKPIIVVT EKDYDRDPEI LKCLDSYTVL 360
  361 VLCSELQITP ILETDVDSFN YTLMKALAAK FYVSS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.68
Transmembrane Helix	21	42	0.70
Non-Cytoplasmic	43	395	0.94