YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21553640
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVGLCKRF FSDRRSLHGI NNALVKTVFT GRKPILGFSG RSFHELRKTG NFVIPRVFSV  60
   61 SRNLTTKASS SSSSKQPAFL RWYLRKLESH PFMTKSITTS VIYMAADLTS QMITMEPTGS 120
  121 FDLIRTARMA SFGLIFLGPS QHLWFSYLSK ILPKRDVLTT FKKIMMGQVL FGPVSNTVFY 180
  181 SYNAALQGEN SEEIVARLKR DLLPTLKNGL MYWPVCDFVT FKYVPVHLQP LMNSSCAYIW 240
  241 TIYLTYMANQ TKADS

Type	Start	End	Confidence
Cytoplasmic	1	90	0.69
Transmembrane Helix	91	109	0.51
Non-Cytoplasmic	110	126	0.72
Transmembrane Helix	127	145	0.67
Cytoplasmic	146	163	0.55
Transmembrane Helix	164	180	0.30
Non-Cytoplasmic	181	255	0.59