YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21553600
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQLTSGASN RIIFILRTLR KCLVFVLSLV LSLLLILRLR PRRRVSPLSS PEDEAVPAPS  60
   61 RRWRRKMAWK LEEEDTARRR SLAEGVEMAG DGEISCSLFY GRRGNALFSR SWLPISGELR 120
  121 GILIIIHGLN EHSGRYSQFA KQLNASNLGV YAMDWIGHGG SDGLHGYVPS LDYVVSDTEA 180
  181 FLEKIRSENP GVPCFLFGHS TGGAVVLKAA SSPSIEDMLA GIVLTSPALR VKPAHPIVGA 240
  241 IAPIFSLLAP RFQFKGANKR GIPVSRDPEA LLAKYSDPLV YTGPIRVRTG YEILRITAYL 300
  301 TRNFKSVTVP FFVLHGTEDK VTDPLASQDL YNQAPSVFKD IKLYDGFLHD LLFEPEREEV 360
  361 GRDIIDWMMN RLDDVNGSAA GLW

Type	Start	End	Confidence
Cytoplasmic	1	18	0.77
Transmembrane Helix	19	39	0.80
Non-Cytoplasmic	40	383	0.90